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Biopython
Introduction
Quick Start
Sequence Objects
Sequence annotation objects
Sequence Input/Output
Multiple Sequence Alignment objects
BLAST
BLAST and other sequence search tools (
experimental code
)
Accessing NCBI’s Entrez databases
Swiss-Prot and ExPASy
Going 3D: The PDB module
Bio.PopGen: Population genetics
Phylogenetics with Bio.Phylo
Sequence motif analysis using Bio.motifs
Cluster analysis
Supervised learning methods
Graphics including GenomeDiagram
KEGG
Cookbook – Cool things to do with it
The Biopython testing framework
Advanced
Where to go from here – contributing to Biopython
Appendix: Useful stuff about Python
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References
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